Research Articles
Bridging the Gap: A Practical Guide to Validating MD Simulations with Experimental Binding Data in Drug Discovery
This article provides a comprehensive guide for researchers and drug development professionals on validating Molecular Dynamics (MD) simulations against experimental binding data.
Benchmarking Molecular Docking Software for Accurate Cancer Target Prediction
This article provides a comprehensive analysis of molecular docking software's accuracy and reliability in predicting drug-target interactions for cancer therapy.
AI in Anticancer Drug Discovery: A Comparative Analysis of Models, Applications, and Clinical Impact
This article provides a comprehensive comparative analysis of artificial intelligence (AI) models transforming anticancer drug discovery.
From In Silico to In Vitro: A Practical Guide to Validating Computational Drug Predictions with Experimental IC50 Data
This article provides a comprehensive guide for researchers and drug development professionals on the critical process of validating computational drug activity predictions with experimental IC50 values.
Validating Computational Models for Cancer Target Identification: From AI Algorithms to Clinical Translation
This article provides a comprehensive overview of the methodologies, applications, and validation frameworks for computational models in cancer target identification.
Overcoming the Ternary Complex Prediction Challenge in PROTAC Design: A Guide to Tools, Validation, and Future Directions
Accurate prediction of PROTAC-mediated ternary complex structures is a pivotal yet formidable challenge in rational degrader design.
Computational Strategies for Undruggable Cancer Targets: From AI Design to Clinical Translation
This article provides a comprehensive overview of cutting-edge computational and AI-driven strategies developed to target traditionally undruggable cancer proteins.
Beyond Static Structures: A 2025 Guide to Mastering Protein Flexibility in Molecular Dynamics Simulations
Protein function is governed by dynamic conformational changes, not static structures, making the accurate handling of flexibility a central challenge in molecular dynamics (MD).
Improving Molecular Docking Accuracy for Flexible Binding Sites: A Guide for Drug Discovery
Accurately predicting ligand binding to flexible sites remains a significant challenge in structure-based drug discovery.
Advances in Molecular Dynamics Simulation Analysis for DNA Intercalators: From Binding Mechanisms to Rational Drug Design
This comprehensive review explores the evolving role of molecular dynamics (MD) simulations in characterizing DNA-intercalator interactions, a critical area for anticancer drug development.